1、生物信息学网站EMBL biocomputing tutorials http:/www.bio.cam.ac.uk/Embnetut/Gcg/index.htmlPlant genome dababase tutorialhttp:/www.nal.usda.gov/pgdic生物信息学机构NCBIhttp:/www.ncbi.nlm.nih.gov/International Nucleotide Sequence Database Collaboration.http:/www.ncbi.nlm.nih.gov/collab/EBIhttp:/www.ebi.ac.uk/USDAhttp
2、:/www.nal.usda.gov/Sanger Centrehttp:/genomic.sanger.ac.uk/北京大学生物信息学中心http:/数据库信息发布及其它GenBank Release Notesftp:/ncbi.nlm.nih.gov/genbank/gbrel.txtdbEST summary reporthttp:/www.ncbi.nlm.nih.gov/dbEST/dbESTsummarv.htmlEMBL release notes http:/www.genome.ad.jp/dbget-bin/showman?emblDDBJ release notes h
3、ttp:/www.ddbj.nig.ac.jp/ddbjnew/ddbjrelnote.htmlEukaryotic promoter database release noteshttp:/www.genome.ad.jp/dbget/dbget2.htmlSwissProt release notes http:/www.genome.ad.jp/dbget-bin/showman?swissprotPIR release notes http:/www.genome.ad.jp/dbget-bin/showman?pirPRF release noteshttp:/www.genome.
4、ad.jp/dbget-bin/showman?prfPDBSTR release notes http:/www.genome.ad.jp/dbget-bin/showman?pdbstrProsite release notes http:/www.genome.ad.jp/dbget-bin/showman?prositePDB release notes http:/www.genome.ad.jp/dbget-bin/showman?pdbKEGG release notes http:/www.genome.ad.jp/dbget-bin/showman?pathway核苷酸数据库
5、GenBankhttp:/www.ncbi.nlm.nih.gov/dbESThttp:/www.ncbi.nlm.nih.gov/dbEST/index.htmldbSTShttp:/www.ncbi.nlm.nih.gov/dbSTS/index.htmldbGSShttp:/www2.ncbi.nlm.nih.gov/dbGSS/index.htmlGenome (NCBI)http:/www.ncbi.nlm.nih.gov/Entrez/Genome/org.htmldbSNPhttp:/www.ncbi.nlm.nih.gov/SNP/HTGShttp:/www.ncbi.nlm.
6、nih.gov/HTGS/UniGenehttp:/www.ncbi.nlm.nih.gov/UniGene/EMBL 核苷酸数据库 http:/www.ebi.ac.uk/emblGenome (EBI)http:/www.ebi.ac.uk/genomes/向 EMBL 数据库提交序列http:/www.ebi.ac.uk/embl/Submission/webin.htmlDDBJ http:/www.ddbj.nig.ac.jp/Plant R gene databasehttp:/www.ncgr.org/rgenes启动子数据库Eukaryotic promoter databas
7、ehttp:/www.epd.isb-sib.chhttp:/www.genome.ad.jp/dbget/dbget2.html转录因子数据库FRANSFAChttp:/transfac.gbf.deooTFDhttp:/www.ifti.org蛋白质数据库SWISS-PROT 或 TrEMBL http:/www.ebi.ac.uk/swissprot/http:/www.expasy.ch/sprot/PIRhttp:/www-nbrf.georgetown.edu/pir/PRF http:/www.prf.or.jp/PDBSTRhttp:/www.genome.ad.jp/dbge
8、t-bin/wwwbfind?pdbstr-todayProsite http:/www.expasy.ch/sprot/prosite.html结构数据库PDB http:/www.rcsb.org/pdbhttp:/www.pdb.orgNDB http:/ndbserver.rutgers.edu/NDB/ndb.htmlhttp:/ndbserver.rutgers.edu/DNA-Binding Protein Databasehttp:/ndbserver.rutgers.edu/NDB . /dnabind/index.htmlNMR Nucleic Acids Database
9、http:/ndbserver.rutgers.edu/NDB/structure-finder/nmr/index.htmlProtein Plus Databasehttp:/ndbserver.rutgers.edu/NDB . /protein/index.htmlSwiss 3Dimage http:/www.expasy.ch/sw3d/SCOP http:/scop.mrc-lmb.cam.ac.uk/scop/CATH http:/www.biochem.ucl.ac.uk/bsm/cath/酶、代谢和调控路径数据库KEGG http:/www.genome.ad.jp/keg
10、g/kegg2.htmlEnzyme Nomenclature Database http:/expasy.hcuge.ch/sprot/enzyme.htmlProtein Kinase Resource (PKR)http:/www.sdsc.edu/kinases/LIGAND http:/www.genome.ad.jp/dbget/ligand.htmlWIT http:/www.cme.msu.edu/WIT/EcoCyc http:/ecocyc.PangeaS http:/www.labmed.umn.edu/umbbd/多种代谢路径数据库http:/www.unl.edu/s
11、tc-95/ResTools/biotools/biotools8.html基因调控路径数据库(TRANSPATH)http:/transfac.gbf.de基因组数据库日本水稻基因组数据库(RGP)http:/rgp.dna.affrc.go.jp华大水稻基因组框架图http:/欧洲水稻测序（第12染色体）http:/s.fr拟南芥基因组数据库http:/www.arabidopsis.orgUSDA Database http:/www.nal.usda.gov/Demeters Genomeshttp:/genome.cornell.eduRiceGenes http:/genome.c
12、ornell.edu/cgi-bin/WebAce/webace?db=ricegenesRiceBlastDB http:/genome.cornell.edu/cgi-bin/WebAce/webace?db=riceblastdbFlyBasehttp:/flybase.bio.indiana.edu/.bin/fbidq.html?FBgn0003075Mouse Genome Informaticshttp:/www.informatics.jax.org/bin/query_accession?id=MGI:97555Saccharomyces Genome Databasehtt
13、p:/genome-url=http:/www.stanford.edu/cgi-bin/dbrun/SacchDB?find+Locus+%22PGK1%22www.stanford.edu/cgi-bin/dbrun/SacchDB?find+Locus+%22PGK1%22/url多种基因组数据库http:/www.hgmp.mrc.ac.uk/GenomeWeb文献数据库PubMedhttp:/www.ncbi.nlm.nih.gov/PubMed/OMIMhttp:/www.ncbi.nlm.nih.gov/Omim/Agricolahttp:/www.nal.usda.gov/ag
14、98/关键词为基础的数据库检索Entrez http:/www.ncbi.nlm.nih.gov/Entrez/Entrez Nucleotide Sequence Search http:/www.ncbi.nlm.nih.gov/Entrez/nucleotide.htmlEntrez Protein Sequence Search http:/www.ncbi.nlm.nih.gov/Entrez/protein.htmlBatch Entrez http:/www.ncbi.nlm.nih.gov/Entrez/batch.htmlSequence Retrieval System,
15、Indiahttp:/bioinfo.ernet.in:80/srs5/Sequence Retrieval System, Singapore http:/www.bic.nus.edu.sg:80/srs5/Sequence Retrieval System, US http:/iubio.bio.indiana.edu:80/srs/srscSequence Retrieval System, UK http:/srs.ebi.ac.uk/GetEntry Nucleotide & Protein Sequence Searchhttp:/ftp2.ddbj.nig.ac.jp:8000
16、/getstart-e.htmlDatabase Search with Key Words http:/ftp2.ddbj.nig.ac.jp:8080/dbsearch-e-new.htmlDBGET/LinkDB http:/www.genome.ad.jp/dbget/dbget2.html序列为基础的数据库检索BLAST http:/www.ncbi.nlm.nih.gov/BLAST/FASTA http:/www2.ebi.ac.uk/fasta3/BLITZ http:/www2.ebi.ac.uk/bicsw/SSearchhttp:/rs.fr/bin/ssearch-gu
17、ess.cgiElectronic PCRhttp:/www.ncbi.nlm.nih.gov/STS/Proteome analysishttp:/www.ebi.ac.uk/proteome/多序列分析Clustal multiple sequence alignmenthttp:/dot.imgen.bcm.tmc.edu:9331/multi-align/Options/clustalw.htmlBCMhttp:/dot.imgen.bcm.tmc.edu:9331/multi-align/multi-align.htmlEBI ClustalW analysishttp:/www.e
18、bi.ac.uk系谱分析PAUP http:/onyx.si.edu/PAUP/EBI ClustalW analysishttp:/www.ebi.ac.ukGCG package http:/ http:/www.vims.edu/mes/hennig/software.htmlGAMBIThttp:/www.lifesci.ucla.edu/mcdb . /Research/Programs/MacClade http:/phylogeny.arizona.edu/macclade/macclade.htmlPhylogenetic analysishttp:/www.unl.edu/s
19、tc-95/ResTools/biotools/biotools2.html基因结构预测分析GENSCAN http:/genes.mit.edu/GENSCAN.htmlGeneFinderhttp:/genomic.sanger.ac.uk/gf/gf.shtmlhttp:/ Feature Searches http:/dot.imgen.bcm.tmc.edu:9331/Grail http:/compbio.ornl.gov/Grail-1.3/GrailEXPhttp:/grail.lsd.ornl.gov/grailexp/GeneMarkhttp:/genemark.biolo
20、gy.gatech.edu/GeneMark/hmmchoice.htmlVeil http:/www.cs.jhu.edu/labs/compbio/veil.htmlAAT http:/genome.cs.mtu.edu/aat.htmlGENEIDhttp:/www.imim.es/GeneIdentification/Geneid/geneid_input.htmlGenlang http:/cbil.humgen.upenn.edu/sdong/genlang_home.htmlGeneParser http:/beagle.colorado.edu/eesnyder/GenePar
21、ser.htmlGlimmerhttp:/www.cs.jhu.edu/labs/compbio/glimmer.htmlMZEF http:/www.cshl.org/genefinderProcrustes http:/www-hto.usc.edu/software/procrustes/蛋白质结构预测分析Expasy http:/www.expasy.ch/Predicting protein secondary structurehttp:/dot.imgen.bcm.tmc.edu:9331/pssprediction/pssp.htmlPredicting protein 3D
22、Structures http:/dove.embl-heidelberg.de/3D/Predicting protein structureshttp:/dot.imgen.bcm.tmc.edu:9331/seq-search/struc-predict.html其它分析工具和软件Putative DNA Sequencing Errors Check http:/www.bork.embl-heidelberg.de/Frame/MatInspectorhttp:/www.gsf.de/cgi-bin/matsearch.plFastM http:/www.gsf.de/cgi-bin
23、/fastm.plWeb Signal Scan http:/www.dna.affrc.go.jp/htdocs/sigscan/signal.htmlBCM Search Launcher http:/dot.imgen.bcm.tmc.edu:9331/seq-util/seq-util.htmlWebcutter http:/ DNA to protein http:/www.expasy.ch/tools/dna.htmlABIM http:/www-biol.univ-mrs.fr/english/logligne.htmlsequence motifs:Pfam http:/ww
24、w.sanger.ac.uk/Pfam/http:/pfam.wustl.edu/ProDomhttp:/protein.toulouse.inra.fr/prodom.htmlPRINTShttp:/www.biochem.ucl.ac.uk/bsm/dbbrowser/PRINTS/其它多种数据库、分析工具和生物信息学机构http:/www.unl.edu/stc-95/Restools/biotools多种数据库和分析工具http:/www.ebi.ac.uk/Tools/Comparative sequence analysishttp:/www.bork.embl-heidelber
25、g.de/功能基因组分析Transcription profiling technologieshttp:/www.ncbi.nlm.nih.gov/ncicgap/expression_tech_info.htmlProtocols for cDNA array technology http:/cmgm.stanford.edu/pbrown/array.htmlData management and analysis of gene expression arrayshttp:/www.nhgri.nih.gov/DIR/LCG/15k/HTML/Examples of commercially available filter arrays:GeneFiltersTM (Research Genetics) http:/Gene Discovery Arrays (Genome Systems) http:/AtlasTM Arrays (CLONTECH) http:/
